YOMIX¶
Yomix is an interactive tool to explore low dimensional embeddings of omics data. It is data agnostic : it can be used on Bulk and single-cell RNA-seq, DNA methylation data etc…
As illustrated in the GIF above, users can explore embeddings—typically generated using dimensionality reduction techniques such as UMAP, t-SNE, TriMap, or VAEs. Within these visualizations, users can identify clusters of interest and use a lasso tool to define specific subsets. Yomix can then compute feature signatures for these subsets almost instantaneously. It can identify feature signatures that best distinguish subset A from the rest of the data, differentiate subset A from subset B, or find features whose expression levels are most strongly correlated with a user-defined direction within subset A.